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How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0813597.2d.2b with 80 members (NADH-ubiquinone oxidoreductase chain)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata /

Completeness score: 0.48

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Representative domain architecture:

Prevalence of repr. domain architecture within HOG:

99.2%

This HOG has 16 similar HOGs:

HOG ID	Deepest level	HOG size	Prevalence	Similarity
HOG:E1027932	LUCA	1445	99.9%	1
HOG:E0312525	Tracheophyta	61	100.0%	1
HOG:E0007138	f__Sulfolobaceae	16	93.8%	1
HOG:E1036644	LUCA	11	100.0%	1
HOG:E0005325	f__Thermoproteaceae	8	100.0%	1
HOG:E0008484	c__Thermoproteia	8	62.5%	1
HOG:E0021405	Archaea	8	87.5%	1
HOG:E0996959	Bacteria	8	37.5%	1
HOG:E0005376	f__Thermoproteaceae	6	100.0%	1
HOG:E0289206	Mesangiospermae	6	50.0%	1
HOG:E0266587	rosids	5	60.0%	1
HOG:E0009000	p__Thermoproteota	4	100.0%	1
HOG:E0273460	Pentapetalae	4	75.0%	1
HOG:E1013543	Bacteria	4	100.0%	1
HOG:E0002674	f__Thermoplasmataceae	3	100.0%	1

Showing 1 to 15 of 15 rows rows per page

HOG:E0813597.2d.2b with 80 members (NADH-ubiquinone oxidoreductase chain)

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Based on:

This HOG has 16 similar HOGs: